PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005979-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 331aa    MW: 37342.5 Da    PI: 6.5574
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005979-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.1e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl
  AHYPO_005979-RA 14 KGPWSPEEDAKLKSYIEKHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.118966IPR017930Myb domain
SMARTSM007173.8E-131364IPR001005SANT/Myb domain
PfamPF002493.7E-161462IPR001005SANT/Myb domain
SuperFamilySSF466893.59E-2114100IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-251579IPR009057Homeodomain-like
CDDcd001676.14E-101662No hitNo description
PROSITE profilePS500904.1936399IPR017877Myb-like domain
SMARTSM007172967101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-780109IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE KHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDKIIL TQLPGRTDND IKNYWNTRLK KKLLGKQRRD QQQHSRNPSN  120
NLILKQEVMD NKMVNPISFT SSLYNNHNQF PFFPQLNLPN YSNSSNNFHG VSNNEDHNHT  180
STMKLLMKIE GDYDHTLNPN QIPFHNHHYP NIHNIDYPNN DIYTHEGLMV EGQSSTFPPE  240
IEALMSSNNG NNPQREVLDG LEFLYGGVGG GGGGAGGDYG GDHLVNNHEE MISMGSLPNL  300
ELDGNALIQG IEEEGSHFEE HMRYPNNVEL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-18141037108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010687509.11e-111PREDICTED: transcription factor RAX3-like
SwissprotQ9FKL26e-71MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A0J8FTP01e-113A0A0J8FTP0_BETVU; Uncharacterized protein
STRINGPOPTR_0002s11440.11e-79(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-62myb domain protein 36